References

1. Arditi, R., and Ginzburg, L.R. (1989). Coupling in predator-prey dynamics: Ratio-dependence. Journal of Theoretical Biology 139: 311-326

2. Athreya, K.B., and Ney, P.E. (1972). Branching Processes. New York, USA: Springer-Verlag

3. Brännström, Ä., Loeuille, N., Loreau, M., and Dieckmann, U. Metabolic scaling, competition, and predation induce repeated adaptive radiation, in preparation

4. Bürger, R. (1998). Mathematical properties of mutation-selection models. Genetica 103: 279-298

5. Bush, G.L. (1969). Sympatric host race formation and speciation in frugivo-rous flies of the genus Rhagoletis (Diptera: Tephritidae). Evolution 23: 237-251

6. Caldarelli, G., Higgs, P.G., and McKane, A.J. (1998). Modelling coevolution in multispecies communities. Journal of Theoretical Biology 193: 345-358

7. Calow, P. (1999). Encyclopedia of Ecology and Environmental Management. Oxford, UK: Blackwell Publishing

8. Cheptou, P.O. (2004). Allee effect and self-fertilization in hermaphrodites: Reproductive assurance in demographically stable populations. Evolution 58: 2613-2621

9. Christiansen, F.B. (1991). On conditions for evolutionary stability for a continuously varying character. American Naturalist 138: 37-50

10. Clements, F.E. (1916). Plant succession: An analysis of the development of vegetation. Publication No. 242. Carnegie Institute Washington, Washington, D.C., USA

11. Crank, J. (1975). The Mathematics of Diffusion. Oxford, UK: Clarendon Press

12. Cressman, R. (1990). Evolutionarily stable strategies depending on population-density. Rocky Mountain Journal of Mathematics 20: 873-877

13. Crow, J.F., and Kimura, M. (1970). An Introduction to Population Genetics Theory. New York, USA: Harper and Row

14. Dercole, F., and Rinaldi, S. (2002). Evolution of cannibalistic traits: Scenarios derived from adaptive dynamics. Theoretical Population Biology 62: 365-374

15. Dercole, F., Ferriére, R., and Rinaldi, S. (2002). Ecological bistability and evolutionary reversals under asymmetrical competition. Evolution 56: 10811090

16. Dieckmann, U. (1994). Coevolutionary Dynamics ofStochastic Replicator Systems. Jülich, Germany: Central Library of the Research Center Jülich

17. Dieckmann, U., and Doebeli, M. (1999). On the origin of species by sympatric speciation. Nature 400: 354-357

18. Dieckmann, U., and Ferriére, R. (2004). Adaptive dynamics and evolving biodiversity. In: Ferriére, R., Dieckmann, U., and Couvet, D., eds. Evolutionary Conservation Biology. Cambridge, UK: Cambridge University Press, pp. 188224

19. Dieckmann, U., and Law, R. (1996). The dynamical theory of coevolution: A derivation from stochastic ecological processes. Journal of Mathematical Biology 34: 579-612

20. Dieckmann, U., Doebeli, M., Metz, J.A.J., and Tautz, D. eds. (2004). Adaptive Speciation. Cambridge, UK: Cambridge University Press

21. Dieckmann, U., Marrow, P., and Law, R. (1995). Evolutionary cycling in predator-prey interactions: Population dynamics and the Red Queen. Journal of Theoretical Biology 176: 91-102

22. Diehl, S., and Feissel, M. (2000). Effects of enrichment on three-level food chains with omnivory. American Naturalist 155: 200-218

23. Doebeli, M., and Dieckmann, U. (2000). Evolutionary branching and sym-patric speciation caused by different types of ecological interactions. American Naturalist 156: S77-S101

24. Doebeli, M., and Dieckmann, U. (2003). Speciation along environmental gradients. Nature 421: 259-264

25. Doebeli, M., and Dieckmann, U. (2005). Adaptive dynamics as a mathematical tool for studying the ecology of speciation processes. Journal of Evolutionary Biology 18: 1194-1200

26. Doebeli, M., Dieckmann, U., Metz, J.A.J., and Tautz, D. (2005). What we have also learned: Adaptive speciation is theoretically plausible. Evolution 59: 691-695

27. Drake, J.A. (1990). Communities as assembled structures: Do rules govern pattern? Trends in Ecology and Evolution 5: 159-164

28. Drossel, B., and McKane, A.J. (2000). Competitive speciation in quantitative genetic models. Journal of Theoretical Biology 204: 467-478

29. Drossel, B., Higgs, P.G., and McKane, A.J. (2001). The influence of predator-prey population dynamics on the long-term evolution of food web structure. Journal of Theoretical Biology 208: 91-107

30. Eliot, C. Method and metaphysics in Clements's and Gleason's ecological explanations. Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences, in press (available online at http://people.hofstra.edu/faculty/Christopher_H_Eliot/ EliotClements.pdf)

31. Elton, C.S. (1958). Ecology of invasions by animals and plants. London, UK: Chapman and Hall

32. Ernande, B., Dieckmann, U., and Heino, M. (2002). Fisheries-induced changes in age and size at maturation and understanding the potential for selection-induced stock collapse. ICES CM 2002/Y:06

33. Eshel, I. (1983). Evolutionary and continuous stability. Journal of Theoretical Biology 103: 99-111

34. Felsenstein, J. (1981). Skepticism towards Santa Rosalia, or Why are there so few kinds of animals? Evolution 35: 124-238

35. Ferriere, R. (2000). Adaptive responses to environmental threats: Evolutionary suicide, insurance, and rescue. International Institute for Applied Systems Analysis, Laxenburg, Austria: Options Spring 2000, pp. 12-16

36. Ferriere, R., Bronstein, J.L., Rinaldi, S., Gauduchon, M., and Law, R. (2002). Cheating and the evolutionary stability of mutualism. Proceedings of Royal Society of London Series B 269: 773-780

37. Fisher, R.A. (1930). The Genetical Theory of Natural Selection. Oxford, UK: Clarendon Press

38. Geritz, S.A.H., and Kisdi, E. (2000). Adaptive dynamics in diploid sexual populations and the evolution of reproductive isolation. Proceedings of the Royal Society of London B 267: 1671-1678

39. Geritz, S.A.H., Gyllenberg, M., Jacobs, F.J.A., and Parvinen, K. (2002) Invasion dynamics and attractor inheritance. Journal of Mathematical Biology 44: 548-560

40. Geritz, S.A.H., Kisdi, E., Meszena, G., and Metz, J.A.J. (1998). Evolutionary singular strategies and the adaptive growth and branching of the evolutionary tree. Evolutionary Ecology 12: 35-57

41. Geritz, S.A.H., Kisdi, E., Meszena, G., and Metz, J.A.J. (2004). Adaptive dynamics of speciation: Ecological underpinnings. In: Dieckmann, U., Doebeli, M., Metz, J.A.J., and Tautz, D. eds. Adaptive Speciation. Cambridge, UK: Cambridge University Press, pp. 54-75

42. Geritz, S.A.H., Metz, J.A.J., Kisdi, E., and Meszena, G. (1997). Dynamics of adaptation and evolutionary branching. Physical Review Letters 78: 2024-2027

43. Gillespie, D.T. (1976). A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 22: 403-434

44. Gleason, H.A. (1926). The individualistic concept of the plant association. Bulletin of the Torrey Botanical Club 53: 7-26

45. Gyllenberg, M., and Parvinen, K. (2001). Necessary and sufficient conditions for evolutionary suicide. Bulletin of Mathematical Biology 63: 981-993

46. Gyllenberg, M., Parvinen, K., and Dieckmann, U. (2002). Evolutionary suicide and evolution of dispersal in structured metapopulations. Journal of Mathematical Biology 45: 79-105

47. Haldane, J.B.S. (1932). The Causes of Evolution. London, UK: Harper

48. Hardin, G. (1968). The tragedy of the commons. Science 162: 1243-1248

49. HilleRisLambers, R., and Dieckmann, U. (2003). Competition and predation in simple food webs: Intermediately strong trade-offs maximize coexistence. Proceedings of the Royal Society of London B 270: 2591-2598

50. HilleRisLambers, R., and Dieckmann, U. Evolving Omnivory: Restrictions on simple food webs imposed by the interplay between ecology and evolution, submitted

51. Holt, R.D., and Polis, G.A. (1997). A theoretical framework for intraguild predation. American Naturalist 149: 745-764

52. Hubbell, S.P. (2001). The Unified Neutral Theory of Biodiversity and Biogeog-raphy. Princeton, USA: Princeton University Press

53. Ito, H., and Ikegami, T. (2003). Evolutionary dynamics of a food web with recursive branching and extinction. In: Standish, R.K., Bedau, M.A., and Abbass, H.A. eds. Artificial Life VIII, Cambridge, USA: MIT Press, pp. 207-215

54. Ito, H.C., and Ikegami, T. (2006). Food web formation with recursive evolutionary branching. Journal of Theoretical Biology 238: 1-10

55. Johnson, P.A., Hoppensteadt, F.C., Smith, J.J., and Bush, G.L. (1996). Conditions for sympatric speciation: A diploid model incorporating habitat fidelity and non-habitat assortative mating. Evolutionary Ecology 10: 187-205

56. Kimura, M. (1965). A stochastic model concerning maintenance of genetic variability in quantitative characters. Proceedings of the National Academy of Sciences of the USA 54: 731-735

57. Kirkpatrick, M. (1996). Genes and adaptation: A pocket guide to theory. In: Rose, M.R., and Lauder, G.V. eds. Adaptation. San Diego, USA: Academic Press, pp. 125-128

58. Kisdi, E., and Meszena, G. (1993). Density-dependent life-history evolution in fluctuating environments. In: Yoshimura, J., and Clark, C. eds. Adaptation in a Stochastic Environment, Lecture Notes in Biomathematics 98. Berlin, Germany: Springer, pp. 26-62

59. Kokko, H., and Brooks, R. (2003). Sexy to die for? Sexual selection and the risk of extinction. Annales Zoologici Fennici 40: 207-219

60. Law, R. (1999). Theoretical aspects of community assembly. In: McGlade, J. ed. Advanced ecological theory: Principles and applications. Oxford, UK: Blackwell Science, pp. 143-171

61. Law, R., Marrow, P., and Dieckmann, U. (1997). On evolution under asymmetric competition. Evolutionary Ecology 11: 485-501

62. Le Galliard, J.F., Ferriere, R., and Dieckmann, U. (2003). The adaptive dynamics of altruism in spatially heterogeneous populations. Evolution 57: 1-17

63. Levins, R. (1962). Theory of fitness in a heterogeneous environment. I. The fitness set and adaptive function. American Naturalist 96: 361-373

64. Levins, R. (1968). Evolution in Changing Environments. Princeton, USA: Princeton University Press

65. Loeuille, N., and Loreau, M. (2005). Evolutionary emergence of size-structured food webs. Proceedings of the National Academy of Sciences of the USA 102: 5761-5766

66. MacArthur, R., and Levins, R. (1967). The limiting similarity, convergence, and divergence of coexisting species. American Naturalist 101: 377-385

67. Matsuda, H. (1985). Evolutionarily stable strategies for predator switching. Journal of Theoretical Biology 115: 351-366

68. Matsuda, H., and Abrams, P.A. (1994a). Runaway evolution to self-extinction under asymmetrical competition. Evolution 48: 1764-1772

69. Matsuda, H., and Abrams, P.A. (1994b). Timid consumers - Self-extinction due to adaptive change in foraging and anti-predator effort. Theoretical Population Biology 45: 76-91

70. May, R.M. (1973). Stability and Complexity in Model Ecosystems. Princeton, USA: Princeton University Press

71. Maynard Smith, J. (1966). Sympatric speciation. American Naturalist 100: 637-650

72. Maynard Smith, J. (1982). Evolution and the Theory of Games. Cambridge, UK: Cambridge University Press

73. Maynard Smith, J., and Price, G.R. (1973). Logic of animal conflict. Nature 246: 15-18

74. Mayr, E. (1963). Animal Species and Evolution. Cambridge, USA: Harvard University Press

75. Mayr, E. (1982). The Growth of Biological Thought: Diversity, Evolution, and Inheritance. Cambridge, USA: The Belknap Press of Harvard University Press

76. McCann, K.S. (2000). The diversity-stability debate. Nature 405: 228-233

77. Meszena, G., Kisdi, E., Dieckmann, U., Geritz, S.A.H., and Metz, J.A.J. (2001). Evolutionary optimisation models and matrix games in the unified perspective of adaptive dynamics. Selection 2: 193-210

78. Metz, J.A.J., Geritz, S.A.H., Meszena, G., Jacobs, F.J.A., and van Heerwaar-den, J.S. (1996). Adaptive dynamics, A geometrical study of the consequences of nearly faithful reproduction. In: van Strien, S.J., Verduyn Lunel, S.M. eds. Stochastic and Spatial Structures of Dynamical Systems. Amsterdam, The Netherlands: North-Holland, pp. 183-231

79. Metz, J.A.J., Nisbet, R.M., and Geritz, S.A.H. (1992). How should we define fitness for general ecological scenarios? Trends in Ecology and Evolution 7: 198-202

80. Meyer, A. (1993). Phylogenetic relationships and evolutionary processes in east African cichlid fishes. Trends in Ecology and Evolution 8: 279-284

81. Mylius, S.D., Klumpers, K., de Roos, A.M., and Persson, L. (2001). Impact of intraguild predation and stage structure on simple communities along a productivity gradient. American Naturalist 158: 259-276

82. Odling-Smee, F.J., Laland, K.N., and Feldman, M.W. (2003). Niche Construction: The Neglected Process in Evolution. Princeton, USA: Princeton University Press

83. Oksanen, L., and Oksanen, T. (2000). The logic and realism of the hypothesis of exploitation ecosystems. American Naturalist 155: 703-723

84. Oksanen, L., Fretwell, S., Arruda, J., and Niemela, P. (1981). Exploitation ecosystems in gradients of primary productivity. American Naturalist 118: 240-261

85. Parvinen, K. (2006). Evolutionary suicide. Acta Biotheoretica 53: 241-264

86. Peters, R.H. (1983). The Ecological Implications of Body Size. Cambridge, UK: Cambridge University Press

87. Post, W.M., and Pimm, S.L. (1983). Community assembly and food web stability. Mathematical Biosciences 64: 169-192

88. Press, W.H., Teukolsky, S.A., Vetterling, W.T., and Flannerty, B.P. (1992). Numerical Recipes in C: The Art of Scientific Computing, 2nd edition. Cambridge, USA: Cambridge University Press

89. Rankin, D.J., and Lopez-Sepulcre, A. (2005). Can adaptation lead to extinction? Oikos 111: 616-619

90. Rosenzweig, M.L. (1978). Competitive speciation. Biological Journal of the Linnean Society 10: 275-289

91. Roughgarden, J. (1974) Species packing and the competition function with illustrations from coral reef fish. Theoretical Population Biology 5: 163-186

92. Roughgarden, J. (1979). Theory of Population Genetics and Evolutionary Ecology: An Intro-duction. New York, USA: Macmillan

93. Roughgarden, J. (1983). The theory of coevolution. In: Futuyma, D.J., and Slatkin, M. eds. Coevolution. Sunderland, USA: Sinauer Associates, pp. 33-64

94. Rummel, J.D., and Roughgarden, J. (1985). A theory of faunal build-up for competition communities. Evolution 39:1009-1033

95. Schliewen, U.K., Tautz, D., and Paabo, S. (1994). Sympatric speciation suggested by monophyly of crater lake cichlids. Nature 368: 629-632

96. Schluter, D. (2000). The Ecology of Adaptive Radiation. Oxford, UK: Oxford University Press

97. Taper, M.L., and Case, T.J. (1992). Coevolution among competitors. In: Fu-tuyma, D., and Antonivics, J. eds. Oxford Surveys in Evolutionary Biology, Volume 8. Oxford, UK: Oxford University Press, pp. 63-111

98. Tilman, D. (1982). Resource Competition and Community Structure. Princeton, USA: Princeton University Press

99. Udovic, D. (1980). Frequency-dependent selection, disruptive selection, and the evolution of reproductive isolation. American Naturalist 116: 621-641

100. van Kampen, N.G. (1992). Stochastic Processes in Physics and Chemistry. Amsterdam, The Netherlands: North-Holland

101. van Tienderen, P.H., and de Jong, G. (1986). Sex-ratio under the haystack model - Polymorphism may occur. Journal of Theoretical Biology 122: 69-81

102. Vandermeer, J.H. (1970). The community matrix and the number of species in a community. American Naturalist 104: 73-83

103. Webb, C.T. (2003). A complete classification of Darwinian extinction in ecological interactions. American Naturalist 161: 181-205

104. Wright, S. (1932). The roles of mutation, inbreeding, crossbreeding and selection in evolution. Proceedings of the 6th International Congress of Genetics 1: 356-366

105. Wright, S. (1967). Surfaces of selective value. Proceedings of the National Academy of Sciences of the USA 102: 81-84

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